Pagnani, Andrea: search on Z-Library

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1

Critical exponents of the KPZ equation via multi-surface coding numerical simulations

Marinari, Enzo, Pagnani, Andrea, Parisi, Giorgio

Journal:

Journal of Physics A: Mathematical and General Physics

Year:

2000

Language:

english

File:

PDF, 143 KB

english, 2000

2

Multisurface coding simulations of the restricted solid-on-solid model in four dimensions

Pagnani, Andrea, Parisi, Giorgio

Journal:

Physical Review E

Year:

2013

Language:

english

File:

PDF, 173 KB

english, 2013

3

Bridging the gaps in systems biology

Cvijovic, Marija, Almquist, Joachim, Hagmar, Jonas, Hohmann, Stefan, Kaltenbach, Hans-Michael, Klipp, Edda, Krantz, Marcus, Mendes, Pedro, Nelander, Sven, Nielsen, Jens, Pagnani, Andrea, Przulj, Natas

Journal:

Molecular Genetics and Genomics

Year:

2014

Language:

english

File:

PDF, 199 KB

english, 2014

4

Inverse problem for multi-body interaction of nonlinear waves

Marruzzo, Alessia, Tyagi, Payal, Antenucci, Fabrizio, Pagnani, Andrea, Leuzzi, Luca

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 1.59 MB

english, 2017

5

A common root for coevolution and substitution rate variability in protein sequence evolution

Rizzato, Francesca, Zamuner, Stefano, Pagnani, Andrea, Laio, Alessandro

Journal:

Scientific Reports

Year:

2019

File:

PDF, 2.61 MB

2019

6

Integrated transcriptional and competitive endogenous RNA networks are cross-regulated in permissive molecular environments

Ala, Ugo, Karreth, Florian A, Bosia, Carla, Pagnani, Andrea, Taulli, Riccardo, Léopold, Valentine, Tay, Yvonne

Year:

2013

Language:

english

File:

PDF, 1.06 MB

english, 2013

7

Nonconvex image reconstruction via expectation propagation

Muntoni, Anna Paola, Rojas, Rafael Díaz Hernández, Braunstein, Alfredo, Pagnani, Andrea, Pérez Castillo, Isaac

Journal:

Physical Review E

Year:

2019

Language:

english

File:

PDF, 1.69 MB

english, 2019

8

Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach

Marc Bailly-Bechet, Alfredo Braunstein, Andrea Pagnani, Martin Weigt, Riccardo Zecchina

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 996 KB

english, 2010

9

Modelling Competing Endogenous RNA Networks

Bosia, Carla, Pagnani, Andrea, Zecchina, Riccardo, Khanin, Raya

Journal:

Year:

2013

Language:

english

File:

PDF, 1.51 MB

english, 2013

10

A common root for coevolution and substitution rate variability in protein sequence evolution

Rizzato, Francesca, Zamuner, Stefano, Pagnani, Andrea, Laio, Alessandro

Journal:

Scientific Reports

Year:

2019

Language:

english

File:

PDF, 2.61 MB

english, 2019

11

Unsupervised inference of protein fitness landscape from deep mutational scan

Fernandez-de-Cossio-Diaz, Jorge, Uguzzoni, Guido, Pagnani, Andrea, Whitehead, Tom

Journal:

Molecular Biology and Evolution

Year:

2020

File:

PDF, 1.44 MB

2020

12

Driven low density granular mixtures

Pagnani, Riccardo, Bettolo Marconi, Umberto Marini, Puglisi, Andrea

Journal:

Physical Review E

Year:

2002

Language:

english

File:

PDF, 136 KB

english, 2002

13

Improving Contact Prediction along Three Dimensions

Feinauer, Christoph, Skwark, Marcin J., Pagnani, Andrea, Aurell, Erik, Dunbrack, Roland L.

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 1.53 MB

english, 2014

14

spin models

Tyagi, Payal, Marruzzo, Alessia, Pagnani, Andrea, Antenucci, Fabrizio, Leuzzi, Luca

Journal:

Physical Review B

Year:

2016

Language:

english

File:

PDF, 841 KB

english, 2016

15

Classification and sparse-signature extraction from gene-expression data

Pagnani, Andrea, Tria, Francesca, Weigt, Martin

Journal:

Journal of Statistical Mechanics Theory and Experiment

Year:

2009

Language:

english

File:

PDF, 1.00 MB

english, 2009

16

RNAs competing for microRNAs mutually influence their fluctuations in a highly non-linear microRNA-dependent manner in single cells

Bosia, Carla, Sgrò, Francesco, Conti, Laura, Baldassi, Carlo, Brusa, Davide, Cavallo, Federica, Cunto, Ferdinando Di, Turco, Emilia, Pagnani, Andrea, Zecchina, Riccardo

Journal:

Year:

2017

Language:

english

File:

PDF, 1.48 MB

english, 2017

17

Stability of the replica symmetric solution in diluted perceptron learning

Lage-Castellanos, Alejandro, Pagnani, Andrea, Quintero Angulo, Gretel

Journal:

Journal of Statistical Mechanics Theory and Experiment

Year:

2013

Language:

english

File:

PDF, 674 KB

english, 2013

18

Simultaneous identification of specifically interacting paralogs and interprotein contacts by direct coupling analysis

Gueudré, Thomas, Baldassi, Carlo, Zamparo, Marco, Weigt, Martin, Pagnani, Andrea

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 1.02 MB

english, 2016

19

ceRNA crosstalk stabilizes protein expression and affects the correlation pattern of interacting proteins

Martirosyan, Araks, De Martino, Andrea, Pagnani, Andrea, Marinari, Enzo

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 1.19 MB

english, 2017

20

[ACM Press the 3rd 2015 Workshop - Lisbon, Portugal (2015.10.01-2015.10.02)] Proceedings of the 3rd 2015 Workshop on ICTs for improving Patients Rehabilitation Research Techniques - REHAB '15 - A virtual system for postural stability assessment based on a TOF camera and a mirror

Placidi, Giuseppe, Petracca, Andrea, Pagnani, Naixia, Spezialetti, Matteo, Iacoviello, Daniela

Year:

2015

Language:

english

File:

PDF, 559 KB

english, 2015

21

Compressed sensing reconstruction using Expectation Propagation

Braunstein, Alfredo, Muntoni, Anna Paola, Pagnani, Andrea, Pieropan, Mirko

Journal:

Journal of Physics A Mathematical and Theoretical

Year:

2019

Language:

english

File:

PDF, 1.12 MB

english, 2019

22

Direct-coupling analysis of residue coevolution captures native contacts across many protein families

Faruck Morcos, Andrea Pagnani, Bryan Lunt, Arianna Bertolino, Debora S. Marks, Chris Sander, Riccardo Zecchina, José N. Onuchic, Terence Hwa and Martin Weigt

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 1.48 MB

english, 2011

23

Genome-wide analysis identifies a functional association of Tet1 and Polycomb repressive complex 2 in mouse embryonic stem cells

Neri, Francesco, Incarnato, Danny, Krepelova, Anna, Rapelli, Stefania, Pagnani, Andrea, Zecchina, Riccardo, Parlato, Caterina, Oliviero, Salvatore

Journal:

Year:

2013

Language:

english

File:

PDF, 1.78 MB

english, 2013

24

Zero-temperature properties of RNA secondary structures

Marinari, Enzo, Pagnani, Andrea, Ricci-Tersenghi, Federico

Journal:

Physical Review E

Year:

2002

Language:

english

File:

PDF, 118 KB

english, 2002

25

Maximum-Entropy Models of Sequenced Immune Repertoires Predict Antigen-Antibody Affinity

Asti, Lorenzo, Uguzzoni, Guido, Marcatili, Paolo, Pagnani, Andrea, Ofran, Yanay

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 2.95 MB

english, 2016

26

Estimating the size of the solution space of metabolic networks

Alfredo Braunstein, Roberto Mulet, Andrea Pagnani

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 3.32 MB

english, 2008

27

[WORLD SCIENTIFIC Proceedings of the Pacific Symposium - Kohala Coast, Hawaii, USA (3 – 7 January 2014)] Biocomputing 2014 - SHARING INFORMATION TO RECONSTRUCT PATIENT-SPECIFIC PATHWAYS IN HETEROGENEOUS DISEASES

GITTER, ANTHONY, BRAUNSTEIN, ALFREDO, PAGNANI, ANDREA, BALDASSI, CARLO, BORGS, CHRISTIAN, CHAYES, JENNIFER, ZECCHINA, RICCARDO, FRAENKEL, ERNEST

Language:

english

File:

PDF, 1.07 MB

english

28

Information theoretic and machine learning approaches to quantify non-linear visual feature interaction underlying visual object recognition

Alemi-Neissi, Alireza, Baldassi, Carlo, Braunstein, Alfredo, Pagnani, Andrea, Zecchina, Riccardo, Zoccolan, Davide

Journal:

BMC Neuroscience

Year:

2012

Language:

english

File:

PDF, 137 KB

english, 2012

29

Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem

Tuncbag, Nurcan, Braunstein, Alfredo, Pagnani, Andrea, Huang, Shao-Shan Carol, Chayes, Jennifer, Borgs, Christian, Zecchina, Riccardo, Fraenkel, Ernest

Journal:

Journal of Computational Biology

Year:

2013

Language:

english

File:

PDF, 505 KB

english, 2013

30

Numerical estimate of the Kardar-Parisi-Zhang universality class in (2+1) dimensions

Pagnani, Andrea, Parisi, Giorgio

Journal:

Physical Review E

Year:

2015

Language:

english

File:

PDF, 192 KB

english, 2015

31

Somatic mutagenesis in satellite cells associates with human skeletal muscle aging

Franco, Irene, Johansson, Anna, Olsson, Karl, Vrtačnik, Peter, Lundin, Pär, Helgadottir, Hafdis T., Larsson, Malin, Revêchon, Gwladys, Bosia, Carla, Pagnani, Andrea, Provero, Paolo, Gustafsson, Thomas

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 1.07 MB

english, 2018

32

Inter-individual variation in nucleotide excision repair pathway is modulated by non-synonymous polymorphisms in ERCC4 and MBD4 genes

Allione, Alessandra, Guarrera, Simonetta, Russo, Alessia, Ricceri, Fulvio, Purohit, Rituraj, Pagnani, Andrea, Rosa, Fabio, Polidoro, Silvia, Voglino, Floriana, Matullo, Giuseppe

Journal:

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis

Year:

2013

Language:

english

File:

PDF, 757 KB

english, 2013

33

Clostridium cellulovorans metabolism of cellulose as studied by comparative proteomic approach

Usai, Giulia, Cirrincione, Simona, Re, Angela, Manfredi, Marcello, Pagnani, Andrea, Pessione, Enrica, Mazzoli, Roberto

Journal:

Journal of Proteomics

Year:

2020

File:

PDF, 1.27 MB

2020

34

Defining the nutritional input for genome-scale metabolic models: A roadmap

Marinos, Georgios, Kaleta, Christoph, Waschina, Silvio, Pagnani, Andrea

Journal:

Year:

2020

File:

PDF, 833 KB

2020

35

[IEEE 2009 47th Annual Allerton Conference on Communication, Control, and Computing (Allerton) - Monticello, IL, USA (2009.09.30-2009.10.2)] 2009 47th Annual Allerton Conference on Communication, Control, and Computing (Allerton) - The importance of dilution in the inference of biological networks

Lage-Castellanos, Alejandro, Pagnani, Andrea, Weigt, Martin

Year:

2009

Language:

english

File:

PDF, 436 KB

english, 2009

36

asymptotics for the coloring problem on random graphs

Krząkała, Florent, Pagnani, Andrea, Weigt, Martin

Journal:

Physical Review E

Year:

2004

Language:

english

File:

PDF, 366 KB

english, 2004

37

A stochastic local search approach to language tree reconstruction

Tria, Francesca, Caglioti, Emanuele, Loreto, Vittorio, Pagnani, Andrea

Journal:

Year:

2010

Language:

english

File:

PDF, 939 KB

english, 2010

38

An analytic approximation of the feasible space of metabolic networks

Braunstein, Alfredo, Muntoni, Anna Paola, Pagnani, Andrea

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 1.06 MB

english, 2017

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